Details for gene set SANSOM_APC_LOSS5

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_minus
GeneSet	SANSOM_APC_LOSS5_UP
Enrichment Score (ES)	0.60803115
Normalized Enrichment Score (NES)	2.2122455
Nominal p-value	0.0
FDR q-value	0.0
FWER p-Value	0.0

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	CDCA7	1428069_at 1445681_at	17	9.326	0.0505	Yes
2	NSUN2	1423850_at 1453759_at	59	8.723	0.0966	Yes
3	WDR43	1428389_s_at 1428390_at	78	8.235	0.1411	Yes
4	RSL1D1	1456383_at	107	7.291	0.1799	Yes
5	DDX21	1448270_at 1448271_a_at	178	6.224	0.2109	Yes
6	NOL5	1450986_at	216	5.797	0.2411	Yes
7	FEM1B	1418323_at 1418324_at	223	5.752	0.2724	Yes
8	FTSJ3	1451026_at	224	5.740	0.3040	Yes
9	CIRH1A	1423884_at	234	5.643	0.3346	Yes
10	MYC	1424942_a_at	302	5.162	0.3600	Yes
11	GNL2	1426579_at	312	5.133	0.3878	Yes
12	SMYD5	1425479_at 1447749_at 1451722_s_at	363	4.931	0.4126	Yes
13	RCC2	1426897_at 1452226_at	529	4.243	0.4284	Yes
14	HK2	1422612_at	550	4.184	0.4505	Yes
15	GRWD1	1436887_x_at 1452171_at 1455841_s_at	669	3.861	0.4663	Yes
16	KIF20A	1449207_a_at	675	3.849	0.4872	Yes
17	EIF4G2	1415863_at 1452758_s_at	983	3.206	0.4908	Yes
18	PES1	1416172_at 1416173_at	1109	3.015	0.5017	Yes
19	PRIM2A	1418035_a_at 1418036_at 1445474_at	1122	2.997	0.5176	Yes
20	RNF4	1423654_a_at 1445749_at 1451072_a_at	1126	2.994	0.5339	Yes
21	HELLS	1417541_at 1430139_at 1453361_at	1219	2.886	0.5456	Yes
22	CD44	1423760_at 1434376_at 1443265_at 1452483_a_at	1288	2.807	0.5579	Yes
23	TIAM1	1418057_at 1444373_at 1453887_a_at	1292	2.802	0.5732	Yes
24	FAM60A	1448126_at	1459	2.636	0.5801	Yes
25	SLC27A1	1422811_at 1435658_at	1690	2.395	0.5827	Yes
26	PLA2G12A	1452026_a_at	1915	2.210	0.5846	Yes
27	PRKRIR	1426482_at 1426483_at	1990	2.155	0.5931	Yes
28	TNFRSF19	1415921_a_at 1425212_a_at 1427600_at 1445949_at 1448147_at	2056	2.107	0.6017	Yes
29	TGIF	1422286_a_at	2490	1.843	0.5920	Yes
30	NCL	1415771_at 1415772_at 1415773_at 1442404_at 1456528_x_at	2565	1.803	0.5985	Yes
31	EIF1	1423798_a_at 1423799_at 1424343_a_at 1424344_s_at	2688	1.754	0.6026	Yes
32	TSPAN12	1438050_x_at 1454604_s_at	2778	1.726	0.6080	Yes
33	ZBTB17	1416224_at 1443041_at	3504	1.473	0.5829	No
34	CD276	1417599_at	3911	1.354	0.5718	No
35	CITED1	1449031_at	4306	1.267	0.5607	No
36	FUSIP1	1418526_at 1418527_a_at 1423982_at 1449121_at	4398	1.249	0.5634	No
37	ADAM8	1416871_at	5151	1.107	0.5351	No
38	NUP54	1432539_a_at 1433580_at 1438951_x_at 1447253_x_at 1459651_s_at	5267	1.087	0.5358	No
39	1110014J01RIK	1444383_at 1448141_at 1456814_at	5320	1.078	0.5394	No
40	GNL3	1433656_a_at 1440766_at	5601	1.037	0.5323	No
41	TXNL4A	1419179_at	5630	1.032	0.5367	No
42	COPS2	1423459_at 1437039_at	6477	0.916	0.5030	No
43	SEMA3C	1420696_at 1429348_at	7371	0.791	0.4665	No
44	FGFR4	1427776_a_at 1427777_x_at 1427845_at 1427846_x_at	7490	0.777	0.4653	No
45	EPHB3	1451550_at	8132	0.691	0.4398	No
46	MMP7	1449478_at	8398	0.657	0.4313	No
47	ZZZ3	1434332_at 1438487_s_at 1441748_at	9494	0.528	0.3841	No
48	2300002G24RIK	1453092_at	10235	0.445	0.3526	No
49	4933403M19RIK	1429999_at	10522	0.416	0.3418	No
50	PLA2G2A	1450128_at	10867	0.376	0.3282	No
51	FOXA2	1422833_at	11404	0.315	0.3054	No
52	KIF5A	1434670_at	11767	0.274	0.2903	No
53	MDFI	1420713_a_at 1425924_at	11931	0.258	0.2843	No
54	IFIT2	1418293_at	12303	0.221	0.2685	No
55	REPS1	1416216_at 1440822_x_at 1446001_at	12410	0.210	0.2648	No
56	LAMC2	1421279_at 1452505_at	12555	0.194	0.2593	No
57	ETF1	1420023_at 1420024_s_at 1424013_at 1440629_at 1451208_at	13633	0.064	0.2103	No
58	MYO1B	1427450_x_at 1441210_at 1447364_x_at 1448989_a_at 1448990_a_at 1458007_at 1459679_s_at	13705	0.053	0.2074	No
59	KCND2	1422834_at 1422835_at 1446065_at 1447764_at 1450773_at 1459288_at	13807	0.039	0.2030	No
60	RIN2	1426368_at 1441209_at 1442829_at	13830	0.037	0.2021	No
61	PCK2	1425615_a_at 1452620_at	13901	0.026	0.1991	No
62	9630050M13RIK	1438402_at	14058	0.007	0.1920	No
63	2810037C14RIK	1417062_at	14265	-0.024	0.1827	No
64	DDIT4	1428306_at	14542	-0.066	0.1704	No
65	CD24	1416034_at 1437502_x_at 1448182_a_at	14737	-0.094	0.1621	No
66	UTP14A	1432250_at 1435099_at	14802	-0.105	0.1597	No
67	CEBPZ	1420497_a_at 1429962_at	14996	-0.136	0.1516	No
68	C80678	1419953_at 1449680_at	15549	-0.230	0.1276	No
69	SRR	1419664_at 1438549_a_at 1438550_x_at 1453421_at 1455045_at 1458393_at	15738	-0.268	0.1205	No
70	HDC	1451796_s_at 1454713_s_at	15988	-0.320	0.1109	No
71	SYNCRIP	1422768_at 1422769_at 1426402_at 1428546_at 1450743_s_at	16053	-0.337	0.1098	No
72	BTC	1421161_at 1435541_at	16143	-0.357	0.1077	No
73	ZRF1	1417657_s_at 1425910_at 1448794_s_at 1454219_at	16193	-0.368	0.1074	No
74	ORC2L	1418225_at 1418226_at 1418227_at	16379	-0.415	0.1013	No
75	RNF149	1429321_at	16622	-0.477	0.0928	No
76	ZFP90	1440334_at 1449126_at	17337	-0.707	0.0640	No
77	PKP1	1449586_at	17471	-0.766	0.0621	No
78	MAP4K4	1422615_at 1440609_at 1448050_s_at 1459912_at	17705	-0.864	0.0562	No
79	PTBP2	1423470_at 1423471_at 1444746_at 1446490_at 1458757_at	17854	-0.931	0.0546	No
80	SOX4	1455867_at 1458332_x_at	17905	-0.950	0.0575	No
81	CDK9	1417269_at 1457240_at	18094	-1.009	0.0545	No
82	KCNQ1	1441588_at 1442029_at 1446255_at 1447418_at 1449464_at 1457781_at 1459443_at	18293	-1.077	0.0513	No
83	ETS2	1416268_at 1437809_x_at 1447685_x_at	18581	-1.205	0.0448	No
84	TGFBR1	1420893_a_at 1420894_at 1420895_at 1446946_at	19470	-1.752	0.0138	No
85	SETD1A	1427116_at	19573	-1.845	0.0193	No
86	HNRPAB	1415914_at 1426114_at 1431349_at 1448144_at 1453849_s_at 1455855_x_at 1459880_at	19761	-1.999	0.0217	No
87	4930573I19RIK	1439502_at	20005	-2.181	0.0226	No
88	1190002H23RIK	1418003_at 1438511_a_at	20977	-3.544	-0.0024	No
89	ANP32B	1417082_at 1446091_at	21923	-8.407	0.0006	No