Details for gene set REACTOME_CELL_CYCLE

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_minus
GeneSet	REACTOME_CELL_CYCLE_CHECKPOINTS
Enrichment Score (ES)	0.5915577
Normalized Enrichment Score (NES)	2.0904672
Nominal p-value	0.0
FDR q-value	2.556802E-4
FWER p-Value	0.0040

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	RFC3	1423700_at 1432538_a_at	206	5.897	0.0214	Yes
2	MCM6	1416251_at 1438852_x_at 1447756_x_at	213	5.833	0.0515	Yes
3	RFC4	1424321_at 1438161_s_at	219	5.766	0.0814	Yes
4	MCM4	1416214_at 1436708_x_at	225	5.728	0.1111	Yes
5	PSMD12	1448492_a_at	264	5.409	0.1376	Yes
6	PSMA4	1460339_at	318	5.099	0.1618	Yes
7	MCM5	1415945_at 1436808_x_at	560	4.167	0.1725	Yes
8	MAD2L1	1422460_at	698	3.780	0.1859	Yes
9	PSMD7	1432820_at 1451056_at 1454368_at	729	3.702	0.2039	Yes
10	PSMA2	1448206_at	744	3.668	0.2224	Yes
11	PSMB3	1417052_at	747	3.666	0.2414	Yes
12	PSMB10	1448632_at	773	3.615	0.2592	Yes
13	RPA2	1416433_at 1454011_a_at	818	3.519	0.2755	Yes
14	RFC5	1452917_at	835	3.489	0.2930	Yes
15	PSMC6	1417771_a_at	882	3.386	0.3086	Yes
16	PSMA7	1423567_a_at 1423568_at	891	3.367	0.3258	Yes
17	PSMA5	1424681_a_at 1434356_a_at	919	3.308	0.3418	Yes
18	BUB1B	1416961_at 1447362_at 1447363_s_at	946	3.263	0.3577	Yes
19	CDC25C	1422252_a_at	1049	3.104	0.3692	Yes
20	PSMD9	1423386_at 1423387_at 1444321_at 1447670_at	1161	2.949	0.3795	Yes
21	PSMC4	1416290_a_at 1416291_at	1172	2.934	0.3944	Yes
22	PSMB9	1450696_at	1201	2.903	0.4082	Yes
23	WEE1	1416773_at 1416774_at	1261	2.836	0.4203	Yes
24	PSMB6	1448822_at	1328	2.765	0.4318	Yes
25	PSMC3	1416282_at	1398	2.695	0.4427	Yes
26	CDKN1A	1421679_a_at 1424638_at	1430	2.662	0.4551	Yes
27	PSMC1	1416005_at	1516	2.575	0.4647	Yes
28	PSMD6	1423696_a_at 1423697_at	1546	2.546	0.4767	Yes
29	PSMB1	1420052_x_at 1420053_at 1448166_a_at	1566	2.522	0.4890	Yes
30	PSMC5	1415740_at	1578	2.503	0.5015	Yes
31	MCM7	1416030_a_at 1416031_s_at 1438320_s_at	1610	2.476	0.5130	Yes
32	CHEK1	1420031_at 1420032_at 1439208_at 1449708_s_at 1450677_at	1615	2.468	0.5257	Yes
33	PSME3	1418078_at 1418079_at 1438509_at	1682	2.402	0.5352	Yes
34	PSMD5	1423234_at	1799	2.309	0.5420	Yes
35	PSMD8	1423296_at	1817	2.287	0.5531	Yes
36	PSMA3	1448442_a_at	1853	2.256	0.5633	Yes
37	PSMB5	1415676_a_at	1978	2.164	0.5689	Yes
38	MCM10	1433407_at 1433408_a_at 1454244_at	2208	2.002	0.5689	Yes
39	PSMD3	1448479_at	2249	1.983	0.5774	Yes
40	MCM2	1434079_s_at 1448777_at	2322	1.939	0.5843	Yes
41	CCNB1	1419943_s_at 1419944_at	2402	1.885	0.5905	Yes
42	ORC1L	1422663_at 1443172_at	2636	1.774	0.5891	Yes
43	PSMA1	1415695_at 1436769_at 1436770_x_at 1458292_at	2780	1.726	0.5916	Yes
44	TP53	1426538_a_at 1427739_a_at 1438808_at 1457623_x_at 1459780_at 1459781_x_at	3061	1.619	0.5872	No
45	UBE2C	1452954_at	3503	1.473	0.5747	No
46	CDC27	1426076_at 1433848_at 1433849_at 1454739_at	3769	1.389	0.5698	No
47	PSMB4	1438984_x_at 1451205_at	3848	1.368	0.5734	No
48	CDC20	1416664_at 1439377_x_at 1439394_x_at	4174	1.293	0.5653	No
49	RPA1	1423293_at 1437309_a_at 1441240_at	4687	1.195	0.5481	No
50	ORC4L	1423336_at 1423337_at 1431172_at 1453804_a_at	5765	1.014	0.5041	No
51	RAD1	1448414_at	6284	0.944	0.4854	No
52	CCNB2	1450920_at	6523	0.910	0.4792	No
53	PSMA6	1416506_at 1435316_at 1435317_x_at 1437144_x_at	6574	0.902	0.4816	No
54	ORC5L	1415830_at 1441601_at	7063	0.831	0.4637	No
55	CDC7	1426002_a_at 1426021_a_at	8225	0.679	0.4141	No
56	PSME1	1417056_at	8994	0.587	0.3820	No
57	RAD9B	1425800_at 1439955_at	9112	0.572	0.3797	No
58	CDC16	1425554_a_at	9315	0.550	0.3733	No
59	PSMD2	1415831_at	9652	0.509	0.3606	No
60	HUS1	1418308_at 1425366_a_at	13218	0.116	0.1981	No
61	ATM	1421205_at 1428830_at	15042	-0.145	0.1155	No
62	BUB3	1416815_s_at 1448058_s_at 1448473_at 1459104_at 1459918_at	15306	-0.186	0.1044	No
63	CDK2	1416873_a_at 1447617_at	15987	-0.320	0.0750	No
64	RFC2	1417503_at 1457638_x_at 1457669_x_at	16192	-0.368	0.0675	No
65	PSMD11	1429370_a_at 1432726_at 1456059_at 1456104_at	16256	-0.383	0.0667	No
66	ORC2L	1418225_at 1418226_at 1418227_at	16379	-0.415	0.0633	No
67	CDC25A	1417131_at 1417132_at 1445995_at	17222	-0.670	0.0282	No
68	PSMD10	1436559_a_at	17470	-0.766	0.0209	No
69	CDC45L	1416575_at 1457838_at	18583	-1.205	-0.0236	No
70	PSMB2	1444377_at 1448262_at 1459641_at	18820	-1.334	-0.0275	No
71	PSMD4	1418874_a_at 1425859_a_at 1451725_a_at	19036	-1.455	-0.0297	No
72	RPA3	1448938_at	19181	-1.555	-0.0282	No
73	MDM2	1423605_a_at 1427718_a_at 1457929_at	20268	-2.435	-0.0652	No
74	UBE2D1	1424062_at	21337	-4.520	-0.0904	No
75	MCM3	1420029_at 1426653_at	21664	-6.234	-0.0728	No
76	PSMD14	1421751_a_at 1446521_at 1457765_at 1459734_at	21905	-8.126	-0.0414	No
77	PSMC2	1426611_at 1435859_x_at 1443307_at	21908	-8.187	0.0013	No