Details for gene set NETPATH

Table: GSEA Results Summary

Dataset	Set_01_ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus.phenotype_ATM_minus_versus_ATM_plus.cls #ATM_minus_versus_ATM_plus_repos
Phenotype	phenotype_ATM_minus_versus_ATM_plus.cls#ATM_minus_versus_ATM_plus_repos
Upregulated in class	ATM_plus
GeneSet	NETPATH_BCR
Enrichment Score (ES)	-0.48023105
Normalized Enrichment Score (NES)	-1.825184
Nominal p-value	0.0
FDR q-value	0.030715518
FWER p-Value	0.447

Table: GSEA details [plain text format]
	PROBE	DESCRIPTION (from dataset)	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	PLCG1	1435149_at 1450360_at	8	9.555	0.0370	No
2	CYCS	1422484_at 1445484_at	10	9.442	0.0739	No
3	FYN	1417558_at 1441647_at 1448765_at	519	4.286	0.0674	No
4	CDK4	1422441_x_at	544	4.192	0.0827	No
5	BLK	1422775_at	610	3.996	0.0954	No
6	PIK3R2	1418463_at	929	3.296	0.0937	No
7	BAX	1416837_at	941	3.274	0.1060	No
8	RAP2A	1421574_at 1426965_at 1440473_at	1124	2.995	0.1094	No
9	RASA1	1426476_at 1426477_at 1426478_at 1438998_at	1500	2.593	0.1023	No
10	MAPKAPK2	1426648_at	1668	2.413	0.1041	No
11	CCNE1	1416492_at 1441910_x_at	1864	2.245	0.1039	No
12	BRAF	1425693_at 1435434_at 1435480_at 1442749_at 1445786_at 1447940_a_at 1447941_x_at 1456505_at 1458641_at	2616	1.782	0.0765	No
13	DOK3	1418096_at	2770	1.728	0.0762	No
14	CD72	1426112_a_at	2883	1.687	0.0777	No
15	CD19	1450570_a_at	3704	1.408	0.0456	No
16	RPS6KA1	1416896_at	4196	1.288	0.0282	No
17	CD79A	1418830_at	4303	1.267	0.0283	No
18	PIK3AP1	1421285_at 1429831_at	4363	1.255	0.0305	No
19	ELK1	1421896_at 1421897_at 1446390_at	4953	1.143	0.0080	No
20	PTPRC	1422124_a_at 1440165_at	4964	1.140	0.0120	No
21	BTK	1422755_at	4976	1.137	0.0159	No
22	MAP3K7	1419988_at 1425795_a_at 1426627_at 1449693_at 1455441_at 1458787_at	5318	1.078	0.0045	No
23	RPS6	1453466_at	5451	1.055	0.0026	No
24	AKT1	1416657_at 1425711_a_at 1440950_at 1442759_at	5518	1.047	0.0036	No
25	LAT2	1426169_a_at	5950	0.993	-0.0122	No
26	CDK7	1424257_at 1439511_at 1451741_a_at 1458987_at	6028	0.983	-0.0119	No
27	MAPK1	1419568_at 1426585_s_at 1442876_at 1453104_at	6326	0.939	-0.0219	No
28	RPS6KB1	1428849_at 1446376_at 1454956_at 1457562_at 1459951_at 1460705_at	6539	0.907	-0.0280	No
29	BLNK	1451780_at	6620	0.895	-0.0282	No
30	CD22	1419768_at 1419769_at 1445222_at	7327	0.796	-0.0574	No
31	MAPK4	1435367_at	8179	0.685	-0.0938	No
32	FCGR2B	1435476_a_at 1435477_s_at 1447622_at 1451941_a_at 1455332_x_at	8353	0.663	-0.0991	No
33	MAPK14	1416703_at 1416704_at 1426104_at 1442364_at 1451927_a_at 1459617_at	9038	0.581	-0.1282	No
34	PRKD1	1422673_at	9255	0.556	-0.1359	No
35	ATP2B4	1445701_at	9675	0.507	-0.1531	No
36	CD81	1416330_at	9681	0.506	-0.1514	No
37	PIP5K1C	1450228_a_at	10793	0.385	-0.2008	No
38	RASGRP3	1438030_at 1438031_at	10928	0.369	-0.2055	No
39	DOK1	1417790_at	10940	0.367	-0.2046	No
40	CRK	1416201_at 1425855_a_at 1436835_at 1448248_at 1460176_at	10980	0.363	-0.2049	No
41	CR2	1425289_a_at	11066	0.354	-0.2074	No
42	PPP3R1	1421786_at 1433591_at 1450368_a_at	11141	0.347	-0.2095	No
43	ZAP70	1422701_at 1439749_at 1440178_x_at	11479	0.306	-0.2237	No
44	SYK	1418261_at 1418262_at 1425797_a_at 1457239_at	11646	0.289	-0.2302	No
45	PTPN11	1421196_at 1427699_a_at 1451225_at	12606	0.188	-0.2734	No
46	PLEKHA1	1417965_at 1443111_at	12832	0.161	-0.2831	No
47	MAPK8	1420931_at 1420932_at 1437045_at 1440856_at 1457936_at	13226	0.116	-0.3007	No
48	JUN	1417409_at 1448694_at	13265	0.110	-0.3020	No
49	CBL	1434829_at 1446608_at 1450457_at 1455886_at	13354	0.098	-0.3056	No
50	BCAR1	1439388_s_at 1450622_at	14615	-0.077	-0.3631	No
51	CDK6	1435338_at 1440040_at 1455287_at 1460291_at	14894	-0.121	-0.3754	No
52	SHC1	1422853_at 1422854_at	14924	-0.125	-0.3762	No
53	PRKCE	1437860_at 1437861_s_at 1442609_at 1444649_at 1449956_at 1452878_at	15005	-0.138	-0.3793	No
54	PIK3R1	1425514_at 1425515_at 1438682_at 1444591_at 1451737_at	15248	-0.177	-0.3897	No
55	CDK2	1416873_a_at 1447617_at	15987	-0.320	-0.4223	No
56	GSK3A	1435638_at	16180	-0.365	-0.4297	No
57	PTPN18	1419125_at 1444894_at	16264	-0.386	-0.4320	No
58	GTF2I	1431675_a_at 1431676_x_at	16292	-0.395	-0.4317	No
59	REL	1420710_at	16635	-0.480	-0.4455	No
60	HCK	1446553_at 1449455_at	16712	-0.502	-0.4470	No
61	NFATC1	1417621_at 1425761_a_at 1428479_at 1447084_at 1447085_s_at	16786	-0.526	-0.4483	No
62	BCL2L11	1426334_a_at 1435448_at 1435449_at 1456005_a_at 1456006_at 1459794_at	16796	-0.528	-0.4466	No
63	RAPGEF1	1421146_at 1427006_at 1441386_at	16807	-0.531	-0.4450	No
64	GAB1	1417693_a_at 1417694_at 1448814_at	16873	-0.552	-0.4458	No
65	CCNA2	1417910_at 1417911_at	17206	-0.662	-0.4584	No
66	IKBKB	1426207_at 1426333_a_at 1432275_at 1445141_at 1454184_a_at	17210	-0.664	-0.4560	No
67	CREB1	1421582_a_at 1421583_at 1423402_at 1428755_at 1452529_a_at 1452901_at	17226	-0.671	-0.4540	No
68	CCND3	1415907_at 1437584_at 1444323_at 1446567_at 1447434_at 1457549_at	17403	-0.737	-0.4592	No
69	GRB2	1418508_a_at 1449111_a_at	17468	-0.764	-0.4592	No
70	LCP2	1418641_at 1418642_at	17507	-0.779	-0.4579	No
71	CTNNB1	1420811_a_at 1430533_a_at 1450008_a_at	17618	-0.827	-0.4597	No
72	CHUK	1417091_at 1428210_s_at 1451383_a_at	17804	-0.903	-0.4646	No
73	NCK1	1421487_a_at 1424543_at 1447271_at	17872	-0.934	-0.4640	No
74	PPP3CA	1426401_at 1438478_a_at 1440051_at 1452056_s_at 1458495_at	17912	-0.953	-0.4621	No
75	ACTR2	1441660_at 1452587_at	18036	-0.996	-0.4638	No
76	ITPR2	1421678_at 1424833_at 1424834_s_at 1427287_s_at 1427693_at 1444418_at 1444551_at 1447328_at	18086	-1.008	-0.4621	No
77	NFKBIA	1420088_at 1420089_at 1438157_s_at 1448306_at 1449731_s_at	18087	-1.008	-0.4582	No
78	RB1	1417850_at 1441494_at 1444400_at 1444454_at 1457447_at	18569	-1.202	-0.4755	Yes
79	ITK	1417171_at 1430833_at 1452518_a_at 1456836_at 1457120_at	18604	-1.214	-0.4723	Yes
80	GAB2	1419829_a_at 1420785_at 1439786_at 1446860_at	18641	-1.233	-0.4692	Yes
81	SOS1	1421884_at 1421885_at 1421886_at	18731	-1.279	-0.4682	Yes
82	LIME1	1416869_x_at 1437589_x_at 1448500_a_at	18834	-1.342	-0.4677	Yes
83	ACTR3	1426392_a_at 1434968_a_at 1452051_at	18862	-1.353	-0.4636	Yes
84	LCK	1425396_a_at 1439145_at 1439146_s_at 1457917_at	19071	-1.481	-0.4673	Yes
85	SOS2	1452281_at	19166	-1.543	-0.4656	Yes
86	CARD11	1430257_at 1435996_at	19280	-1.617	-0.4645	Yes
87	HCLS1	1418842_at	19361	-1.671	-0.4616	Yes
88	MAPK3	1427060_at	19380	-1.691	-0.4558	Yes
89	NFATC2	1425901_at 1425990_a_at 1426031_a_at 1426032_at 1439205_at 1440426_at	19581	-1.851	-0.4577	Yes
90	DAPP1	1421936_at 1421937_at 1447337_at	19606	-1.880	-0.4515	Yes
91	IKBKG	1421208_at 1421209_s_at 1435646_at 1435647_at 1450161_at 1454690_at	19699	-1.951	-0.4481	Yes
92	BCL10	1418970_a_at 1418971_x_at 1418972_at 1443524_x_at	19756	-1.997	-0.4428	Yes
93	NEDD9	1422818_at 1437132_x_at 1447885_x_at 1450767_at	19885	-2.073	-0.4406	Yes
94	ATF2	1426582_at 1426583_at 1427559_a_at 1437777_at 1452116_s_at 1459237_at	19925	-2.103	-0.4341	Yes
95	PTK2B	1434653_at 1442437_at 1442927_at	19935	-2.111	-0.4263	Yes
96	CBLB	1437304_at 1455082_at 1458469_at	19947	-2.123	-0.4185	Yes
97	WAS	1419631_at	20171	-2.335	-0.4196	Yes
98	HDAC5	1415743_at	20190	-2.352	-0.4112	Yes
99	SLA2	1437504_at 1451492_at	20471	-2.687	-0.4135	Yes
100	CASP9	1426125_a_at 1437537_at 1457816_at	20601	-2.861	-0.4082	Yes
101	PTPN6	1456694_x_at 1460188_at	20681	-2.991	-0.4001	Yes
102	RELA	1419536_a_at	20799	-3.184	-0.3930	Yes
103	CRKL	1421953_at 1421954_at 1425604_at 1436950_at	20897	-3.384	-0.3842	Yes
104	VAV1	1422932_a_at	21119	-3.839	-0.3794	Yes
105	PDPK1	1415729_at 1416501_at 1459775_at 1459776_x_at	21147	-3.899	-0.3653	Yes
106	SH3BP2	1448328_at	21281	-4.255	-0.3548	Yes
107	BCL2	1422938_at 1427818_at 1437122_at 1440770_at 1443837_x_at 1457687_at	21309	-4.363	-0.3389	Yes
108	PDK2	1448825_at	21401	-4.705	-0.3247	Yes
109	PRKCQ	1426044_a_at	21404	-4.723	-0.3063	Yes
110	CSK	1423518_at 1439744_at	21538	-5.342	-0.2915	Yes
111	CD79B	1417640_at	21546	-5.396	-0.2707	Yes
112	NFATC3	1419976_s_at 1452497_a_at	21671	-6.290	-0.2518	Yes
113	CD5	1418353_at	21674	-6.309	-0.2272	Yes
114	PRKCD	1422847_a_at 1442256_at	21741	-6.917	-0.2032	Yes
115	BCL6	1421818_at 1450381_a_at	21780	-7.247	-0.1765	Yes
116	CASP7	1426062_a_at 1448659_at	21786	-7.283	-0.1483	Yes
117	CCND2	1416122_at 1416123_at 1416124_at 1430127_a_at 1434745_at 1448229_s_at 1455956_x_at	21833	-7.719	-0.1202	Yes
118	PTK2	1423059_at 1430827_a_at 1439198_at 1440082_at 1441475_at 1443384_at 1445137_at	21846	-7.797	-0.0902	Yes
119	GSK3B	1434439_at 1437001_at 1439931_at 1439949_at 1451020_at 1454958_at	21861	-7.833	-0.0602	Yes
120	VAV2	1421272_at 1435065_x_at 1435244_at 1458758_at	21902	-8.090	-0.0304	Yes
121	TEC	1441524_at 1460204_at	21906	-8.156	0.0014	Yes