• Resource: panther/VEGF_signaling_pathway.owl; different types of problem: 13
    • number of genes : 0  number of physical entities : 63  number of pathways : 1  number of interactions : 53 
    • auto-fix: true; normalize:
    • errors/warnings: 180 - not fixed: 130;  errors not fixed: 6
    • Modified BioPAX  ("escaped" RDF in HTML; choose BioPAX or XML as return if you plan to process it)
    • ERROR: cardinality.violated , category: SPECIFICATION,  cases: 6,  not fixed: 6
      Cardinality violation
      • object: DISSOCIATION
        property: db requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.XrefDbCRRule)
      • object: HETERODIMER_ASSOCIATION
        property: db requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.XrefDbCRRule)
      • object: INHIBITION
        property: db requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.XrefDbCRRule)
      • object: PHYSICAL_STIMULATION
        property: db requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.XrefDbCRRule)
      • object: STATE_TRANSITION
        property: db requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.XrefDbCRRule)
      • object: TRANSPORT
        property: db requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.XrefDbCRRule)

    • WARNING: cardinality.violated , category: SPECIFICATION,  cases: 12,  not fixed: 12
      Cardinality violation
      • object: CELLDESIGNER_INTERACTION_VOCABULARY=DISSOCIATION
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: CELLDESIGNER_INTERACTION_VOCABULARY=HETERODIMER_ASSOCIATION
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: CELLDESIGNER_INTERACTION_VOCABULARY=STATE_TRANSITION
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: CELLDESIGNER_INTERACTION_VOCABULARY=TRANSPORT
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: CELLDESIGNER_REACTION_TYPE=DISSOCIATION
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: CELLDESIGNER_REACTION_TYPE=HETERODIMER_ASSOCIATION
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: CELLDESIGNER_REACTION_TYPE=INHIBITION
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: CELLDESIGNER_REACTION_TYPE=PHYSICAL_STIMULATION
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: CELLDESIGNER_REACTION_TYPE=STATE_TRANSITION
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: CELLDESIGNER_REACTION_TYPE=TRANSPORT
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: EVIDENCE_CODE_VOCABULARY_60
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: PANTHER_GROUPING_8
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)

    • WARNING: illegal.conversion , category: INFORMATION,  cases: 4,  not fixed: 4
      A bio-polymer (i.e., not a complex or small molecule) is either missing or "becomes" another type on the other side of the same Conversion interaction (except for Degradation and ComplexAssembly)
      • object: _BAD_s10_a10_
        conversion: STATE_TRANSITION_LEFT__BAD-RIGHT__BAD-_re29
        (found by: org.biopax.validator.rules.SimplePhysicalEntityConversionRule)
      • object: _BAD_s10_sa63_
        conversion: STATE_TRANSITION_LEFT__BAD-RIGHT__BAD-_re29
        (found by: org.biopax.validator.rules.SimplePhysicalEntityConversionRule)
      • object: _cPLA2_s67_a24_
        conversion: STATE_TRANSITION_LEFT__Ca2_PLUS_-_cPLA2-RIGHT__Complex__cPLA2_endsub_Ca2_PLUS__endsuper_-_r71
        (found by: org.biopax.validator.rules.SimplePhysicalEntityConversionRule)
      • object: _eNOS_s11_a73_
        conversion: STATE_TRANSITION_LEFT__eNOS-_Ca2_PLUS_-RIGHT__Complex__eNOS_Ca2_PLUS__endsuper_-_r70
        (found by: org.biopax.validator.rules.SimplePhysicalEntityConversionRule)

    • WARNING: illegal.cv.term , category: SPECIFICATION,  cases: 12,  not fixed: 12
      Term is not found in the recommended controlled vocabulary (- wrong name/spelling or the identifier/accession is used instead of the term)
      • object: CELLDESIGNER_INTERACTION_VOCABULARY=DISSOCIATION
        Illegal term(s): [DISSOCIATION]; [Valid 'MI' terms: ALL children of MI:0190]
        (found by: org.biopax.validator.rules.InteractionTypeCvRule)
      • object: CELLDESIGNER_INTERACTION_VOCABULARY=HETERODIMER_ASSOCIATION
        Illegal term(s): [HETERODIMER_ASSOCIATION]; [Valid 'MI' terms: ALL children of MI:0190]
        (found by: org.biopax.validator.rules.InteractionTypeCvRule)
      • object: CELLDESIGNER_INTERACTION_VOCABULARY=STATE_TRANSITION
        Illegal term(s): [STATE_TRANSITION]; [Valid 'MI' terms: ALL children of MI:0190]
        (found by: org.biopax.validator.rules.InteractionTypeCvRule)
      • object: CELLDESIGNER_INTERACTION_VOCABULARY=TRANSPORT
        Illegal term(s): [TRANSPORT]; [Valid 'MI' terms: ALL children of MI:0190]
        (found by: org.biopax.validator.rules.InteractionTypeCvRule)
      • object: CELLDESIGNER_REACTION_TYPE=DISSOCIATION
        Illegal term(s): [DISSOCIATION]; [Valid 'MI' terms: ALL children of MI:0353]
        (found by: org.biopax.validator.rules.RelationshipTypeCvRule)
      • object: CELLDESIGNER_REACTION_TYPE=HETERODIMER_ASSOCIATION
        Illegal term(s): [HETERODIMER_ASSOCIATION]; [Valid 'MI' terms: ALL children of MI:0353]
        (found by: org.biopax.validator.rules.RelationshipTypeCvRule)
      • object: CELLDESIGNER_REACTION_TYPE=INHIBITION
        Illegal term(s): [INHIBITION]; [Valid 'MI' terms: ALL children of MI:0353]
        (found by: org.biopax.validator.rules.RelationshipTypeCvRule)
      • object: CELLDESIGNER_REACTION_TYPE=PHYSICAL_STIMULATION
        Illegal term(s): [PHYSICAL_STIMULATION]; [Valid 'MI' terms: ALL children of MI:0353]
        (found by: org.biopax.validator.rules.RelationshipTypeCvRule)
      • object: CELLDESIGNER_REACTION_TYPE=STATE_TRANSITION
        Illegal term(s): [STATE_TRANSITION]; [Valid 'MI' terms: ALL children of MI:0353]
        (found by: org.biopax.validator.rules.RelationshipTypeCvRule)
      • object: CELLDESIGNER_REACTION_TYPE=TRANSPORT
        Illegal term(s): [TRANSPORT]; [Valid 'MI' terms: ALL children of MI:0353]
        (found by: org.biopax.validator.rules.RelationshipTypeCvRule)
      • object: ECO:0000044
        Illegal term(s): [ISS]; [Valid 'MI' terms: ALL children of MI:0001, Valid 'MI' terms: ALL children of MI:0003, Valid 'MI' terms: ALL children of MI:0002]
        (found by: org.biopax.validator.rules.EvidenceCodeCvRule)
      • object: EVIDENCE_CODE_VOCABULARY_60
        Illegal term(s): [IDA]; [Valid 'MI' terms: ALL children of MI:0001, Valid 'MI' terms: ALL children of MI:0003, Valid 'MI' terms: ALL children of MI:0002]
        (found by: org.biopax.validator.rules.EvidenceCodeCvRule)

    • WARNING: illegal.cv.xref , category: SPECIFICATION,  cases: 1,  not fixed: 1
      Unification xref cannot be resolved to a recommended term for the controlled vocabulary
      • object: ECO:0000044
        Illegal xref(s): [eco:ECO:0000044]; info: [Valid 'MI' terms: ALL children of MI:0001, Valid 'MI' terms: ALL children of MI:0003, Valid 'MI' terms: ALL children of MI:0002]
        (found by: org.biopax.validator.rules.EvidenceCodeCvRule)

    • WARNING: min.cardinality.violated , category: SPECIFICATION,  cases: 12,  not fixed: 12
      Minimal cardinality violation
      • object: _Erk_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _HSP27_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _MAPKAPK2_3_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _MEK_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _Paxillin_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _PI3K_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _PKC_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _PLC__gamma__PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _Rac_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _Raf_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _Ras_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _SPK_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)

    • WARNING: multiple.location , category: INFORMATION,  cases: 1,  not fixed: 1
      Participants span multiple cellular locations. This may be an error e.g. if the cellular locations do not connect to each other. Check that this information makes sense
      • object: HETERODIMER_ASSOCIATION_LEFT__VEGF-_VEGFR_2-RIGHT__Complex__VEGFR_2_VEGF_-_r57
        participants: _VEGF_s2_a60_, _VEGFR_2_s1_a59_
        (found by: org.biopax.validator.rules.InteractionParticipantsLocationRule)

    • WARNING: no.display.name , category: RECOMMENDATION,  cases: 49,  all fixed!
      No display name is specified. It is useful to have one for the visualization purposes
      • [FIXED!]  object: http://identifiers.org/uniprot/O00329
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/O00443
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/O00459
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/O00750
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/O43294
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/O60711
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/O94806
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P01111
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P01112
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P02489
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P02511
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P04049
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P04792
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P05129
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P05771
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P10398
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P15056
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P15153
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P16885
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P17252
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P19174
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P24723
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P27361
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P27986
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P28482
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P36507
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P41743
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P42336
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P42338
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P48736
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P49023
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P49137
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P60763
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P63000
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P85298
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P85299
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q02156
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q02750
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q04759
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q05513
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q05655
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q07960
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q15139
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q16644
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q8NEB9
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q92569
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q9BZL6
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q9NRA0
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q9NYA1
        (found by: org.biopax.validator.rules.DisplayNameRule)

    • WARNING: no.xref.cv.terms , category: RECOMMENDATION,  cases: 1,  all fixed!
      Controlled vocabulary(-ies) without unification xrefs for some of the (valid) terms
      • [FIXED!]  object: PANTHER_GROUPING_8
        terms: {By Homology=[OntologyTermImpl{acc='MI:2163', name='by homology'}]}; MI:2163 added!; info: [Valid 'MI' terms: ALL children of MI:0353]
        (found by: org.biopax.validator.rules.RelationshipTypeCvRule)

    • WARNING: no.xrefs , category: RECOMMENDATION,  cases: 12,  not fixed: 12
      EntityReference does not have any xrefs
      • object: _Erk_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _HSP27_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _MAPKAPK2_3_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _MEK_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _Paxillin_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _PI3K_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _PKC_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _PLC__gamma__PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _Rac_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _Raf_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _Ras_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _SPK_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)

    • WARNING: not.allowed.xref , category: RECOMMENDATION,  cases: 1,  not fixed: 1
      Database name in the UnificationXref (of a BioPAX element), probably, does not make sense for this type of element
      • object: eco_ECO:0000044_13
        element: ECO:0000044, xref.db: eco (unification xrefs of: EvidenceCodeVocabulary are limited to: [PSI MI, PSI-MI, mi, MI, PSIMI, MOLECULAR INTERACTIONS ONTOLOGY])
        (found by: org.biopax.validator.rules.UnificationXrefLimitedRule)

    • WARNING: null.entity.reference , category: RECOMMENDATION,  cases: 2,  not fixed: 2
      A Protein, SmallMolecule, etc. (but not a complex) has neither 'entityReference' (highly recommended) nor 'memberPhysicalEntity' values set
      • object: _BAD_s10_a10_
        entityReference (range: ProteinReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.ProteinEntityReferenceRule)
      • object: _BAD_s10_sa63_
        entityReference (range: ProteinReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.ProteinEntityReferenceRule)

    • WARNING: too.long.display.name , category: RECOMMENDATION,  cases: 67,  not fixed: 67
      'displayName' exceeds the recommended maximum. These names should be kept short so they can easily be displayed, e.g., in a pathway diagram
      • object: _Complex__cPLA2_endsub_Ca2_PLUS__endsuper__s71_a78_
        Complex (cPLA2_endsub/Ca2+_endsuper), length=36 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _Complex__eNOS_Ca2_PLUS__endsuper__s50_a77_
        Complex (eNOS/Ca2+_endsuper), length=28 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: DISSOCIATION_LEFT__PIP2-RIGHT__IP3-_DAG-_r55
        DISSOCIATION_LEFT__PIP2-RIGHT__IP3-_DAG-_r55, length=44 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: HETERODIMER_ASSOCIATION_LEFT__PKC-_Ca2_PLUS_-RIGHT__PKC_Ca2_PLUS_-_re30
        HETERODIMER_ASSOCIATION_LEFT__PKC-_Ca2_PLUS_-RIGHT__PKC_Ca2_PLUS_-_re30, length=71 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: HETERODIMER_ASSOCIATION_LEFT__VEGF-_VEGFR_2-RIGHT__Complex__VEGFR_2_VEGF_-_r57
        HETERODIMER_ASSOCIATION_LEFT__VEGF-_VEGFR_2-RIGHT__Complex__VEGFR_2_VEGF_-_r57, length=78 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/O00329
        Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform(auto-created form other names!), length=78 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/O00443
        Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha(auto-created form other names!), length=76 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/O00459
        Phosphatidylinositol 3-kinase regulatory subunit beta(auto-created form other names!), length=53 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/O00750
        Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta(auto-created form other names!), length=75 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/O43294
        Transforming growth factor beta-1-induced transcript 1 protein(auto-created form other names!), length=62 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/O94806
        Serine/threonine-protein kinase D3(auto-created form other names!), length=34 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P04049
        RAF proto-oncogene serine/threonine-protein kinase(auto-created form other names!), length=50 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P05129
        Protein kinase C gamma type(auto-created form other names!), length=27 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P05771
        Protein kinase C beta type(auto-created form other names!), length=26 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P10398
        Serine/threonine-protein kinase A-Raf(auto-created form other names!), length=37 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P15056
        Serine/threonine-protein kinase B-raf(auto-created form other names!), length=37 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P15153
        Ras-related C3 botulinum toxin substrate 2(auto-created form other names!), length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P16885
        1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2(auto-created form other names!), length=65 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P17252
        Protein kinase C alpha type(auto-created form other names!), length=27 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P19174
        1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1(auto-created form other names!), length=65 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P27361
        Mitogen-activated protein kinase 3(auto-created form other names!), length=34 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P27986
        Phosphatidylinositol 3-kinase regulatory subunit alpha(auto-created form other names!), length=54 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P28482
        Mitogen-activated protein kinase 1(auto-created form other names!), length=34 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P36507
        Dual specificity mitogen-activated protein kinase kinase 2(auto-created form other names!), length=58 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P41743
        Protein kinase C iota type(auto-created form other names!), length=26 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P42336
        Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform(auto-created form other names!), length=78 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P42338
        Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit beta isoform(auto-created form other names!), length=77 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P48736
        Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform(auto-created form other names!), length=78 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P49137
        MAP kinase-activated protein kinase 2(auto-created form other names!), length=37 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P60763
        Ras-related C3 botulinum toxin substrate 3(auto-created form other names!), length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P63000
        Ras-related C3 botulinum toxin substrate 1(auto-created form other names!), length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P85298
        Rho GTPase-activating protein 8(auto-created form other names!), length=31 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q02156
        Protein kinase C epsilon type(auto-created form other names!), length=29 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q02750
        Dual specificity mitogen-activated protein kinase kinase 1(auto-created form other names!), length=58 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q04759
        Protein kinase C theta type(auto-created form other names!), length=27 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q05513
        Protein kinase C zeta type(auto-created form other names!), length=26 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q05655
        Protein kinase C delta type(auto-created form other names!), length=27 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q07960
        Rho GTPase-activating protein 1(auto-created form other names!), length=31 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q15139
        Serine/threonine-protein kinase D1(auto-created form other names!), length=34 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q16644
        MAP kinase-activated protein kinase 3(auto-created form other names!), length=37 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q8NEB9
        Phosphatidylinositol 3-kinase catalytic subunit type 3(auto-created form other names!), length=54 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q92569
        Phosphatidylinositol 3-kinase regulatory subunit gamma(auto-created form other names!), length=54 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q9BZL6
        Serine/threonine-protein kinase D2(auto-created form other names!), length=34 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__Akt_PKB-RIGHT__Akt_PKB-_r69
        STATE_TRANSITION_LEFT__Akt_PKB-RIGHT__Akt_PKB-_r69, length=50 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__BAD-RIGHT__BAD-_re29
        STATE_TRANSITION_LEFT__BAD-RIGHT__BAD-_re29, length=43 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__Ca2_PLUS_-_cPLA2-RIGHT__Complex__cPLA2_endsub_Ca2_PLUS__endsuper_-_r71
        STATE_TRANSITION_LEFT__Ca2_PLUS_-_cPLA2-RIGHT__Complex__cPLA2_endsub_Ca2_PLUS__endsuper_-_r71, length=93 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__Caspase9-RIGHT__Caspase9-_re28
        STATE_TRANSITION_LEFT__Caspase9-RIGHT__Caspase9-_re28, length=53 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__eNOS-_Ca2_PLUS_-RIGHT__Complex__eNOS_Ca2_PLUS__endsuper_-_r70
        STATE_TRANSITION_LEFT__eNOS-_Ca2_PLUS_-RIGHT__Complex__eNOS_Ca2_PLUS__endsuper_-_r70, length=84 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__Erk-RIGHT__Erk-_r49
        STATE_TRANSITION_LEFT__Erk-RIGHT__Erk-_r49, length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__Ets-RIGHT__Ets-_r54
        STATE_TRANSITION_LEFT__Ets-RIGHT__Ets-_r54, length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__FAK-RIGHT__FAK-_r62
        STATE_TRANSITION_LEFT__FAK-RIGHT__FAK-_r62, length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__HIF_1-RIGHT__HIF_1-_r53
        STATE_TRANSITION_LEFT__HIF_1-RIGHT__HIF_1-_r53, length=46 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__HSP27-RIGHT__HSP27-_r65
        STATE_TRANSITION_LEFT__HSP27-RIGHT__HSP27-_r65, length=46 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__MAPKAPK2_3-RIGHT__MAPKAPK2_3-_r64
        STATE_TRANSITION_LEFT__MAPKAPK2_3-RIGHT__MAPKAPK2_3-_r64, length=56 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__MEK-RIGHT__MEK-_r48
        STATE_TRANSITION_LEFT__MEK-RIGHT__MEK-_r48, length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__p38MAPK-RIGHT__p38MAPK-_r63
        STATE_TRANSITION_LEFT__p38MAPK-RIGHT__p38MAPK-_r63, length=50 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__Paxillin-RIGHT__Paxillin-_r61
        STATE_TRANSITION_LEFT__Paxillin-RIGHT__Paxillin-_r61, length=52 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__PI3K-RIGHT__PI3K-_r66
        STATE_TRANSITION_LEFT__PI3K-RIGHT__PI3K-_r66, length=44 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__PIP2-RIGHT__PIP3-_r67
        STATE_TRANSITION_LEFT__PIP2-RIGHT__PIP3-_r67, length=44 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__PLC_gamma-RIGHT__PLC_gamma-_r58
        STATE_TRANSITION_LEFT__PLC_gamma-RIGHT__PLC_gamma-_r58, length=54 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__Rac-RIGHT__Rac-_r68
        STATE_TRANSITION_LEFT__Rac-RIGHT__Rac-_r68, length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__Raf-RIGHT__Raf-_r47
        STATE_TRANSITION_LEFT__Raf-RIGHT__Raf-_r47, length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__Ras-RIGHT__Ras-_r46
        STATE_TRANSITION_LEFT__Ras-RIGHT__Ras-_r46, length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__Sck-RIGHT__Sck-_r60
        STATE_TRANSITION_LEFT__Sck-RIGHT__Sck-_r60, length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__SPK-RIGHT__SPK-_r45
        STATE_TRANSITION_LEFT__SPK-RIGHT__SPK-_r45, length=42 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__VRAP-RIGHT__VRAP-_r59
        STATE_TRANSITION_LEFT__VRAP-RIGHT__VRAP-_r59, length=44 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: TRANSPORT_LEFT__Ca2_PLUS_-RIGHT__Ca2_PLUS_-_r56
        TRANSPORT_LEFT__Ca2_PLUS_-RIGHT__Ca2_PLUS_-_r56, length=47 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)