• Resource: panther/De_novo_purine_biosynthesis.owl; different types of problem: 10
    • number of genes : 0  number of interactions : 48  number of pathways : 1  number of physical entities : 66 
    • auto-fix: true; normalize:
    • errors/warnings: 129 - not fixed: 109;  errors not fixed: 5
    • Modified BioPAX  ("escaped" RDF in HTML; choose BioPAX or XML as return if you plan to process it)
    • ERROR: cardinality.violated , category: SPECIFICATION,  cases: 1,  not fixed: 1
      Cardinality violation
      • object: STATE_TRANSITION
        property: db requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.XrefDbCRRule)

    • ERROR: no.xrefs , category: RECOMMENDATION,  cases: 4,  not fixed: 4
      EntityReference does not have any xrefs
      • object: _ATP_reductase_PROTEIN
        (found by: org.biopax.validator.rules.EntityReferenceXrefRule)
      • object: _GTP_reductase_PROTEIN
        (found by: org.biopax.validator.rules.EntityReferenceXrefRule)
      • object: _N5_carboxyaminoimidazole_br_ribonucleotide_mutase_PROTEIN
        (found by: org.biopax.validator.rules.EntityReferenceXrefRule)
      • object: _N5_carboxyaminoimidazole_br_ribonucleotide_synthase_PROTEIN
        (found by: org.biopax.validator.rules.EntityReferenceXrefRule)

    • WARNING: cardinality.violated , category: SPECIFICATION,  cases: 7,  not fixed: 7
      Cardinality violation
      • object: _ATP_reductase_PROTEIN
        property: organism requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ProteinReferenceOrganismRule)
      • object: _GTP_reductase_PROTEIN
        property: organism requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ProteinReferenceOrganismRule)
      • object: _N5_carboxyaminoimidazole_br_ribonucleotide_mutase_PROTEIN
        property: organism requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ProteinReferenceOrganismRule)
      • object: _N5_carboxyaminoimidazole_br_ribonucleotide_synthase_PROTEIN
        property: organism requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ProteinReferenceOrganismRule)
      • object: CELLDESIGNER_INTERACTION_VOCABULARY=STATE_TRANSITION
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: CELLDESIGNER_REACTION_TYPE=STATE_TRANSITION
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)
      • object: PANTHER_GROUPING_90
        property: xref requires exactly 1 value(s)
        (found by: org.biopax.validator.rules.ControlledVocabularyXrefCRRule)

    • WARNING: illegal.cv.term , category: SPECIFICATION,  cases: 2,  not fixed: 2
      Term is not found in the recommended controlled vocabulary (- wrong name/spelling or the identifier/accession is used instead of the term)
      • object: CELLDESIGNER_INTERACTION_VOCABULARY=STATE_TRANSITION
        Illegal term(s): [STATE_TRANSITION]; [Valid 'MI' terms: ALL children of MI:0190]
        (found by: org.biopax.validator.rules.InteractionTypeCvRule)
      • object: CELLDESIGNER_REACTION_TYPE=STATE_TRANSITION
        Illegal term(s): [STATE_TRANSITION]; [Valid 'MI' terms: ALL children of MI:0353]
        (found by: org.biopax.validator.rules.RelationshipTypeCvRule)

    • WARNING: min.cardinality.violated , category: SPECIFICATION,  cases: 7,  not fixed: 7
      Minimal cardinality violation
      • object: _Adenylate_kinase_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _Adenylosuccinate_synthase_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _ADP_reductase_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _dADP_kinase_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _dGDP_kinase_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _GDP_kinase_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)
      • object: _GDP_reductase_PROTEIN
        property: organism requires at least 1 value(s).
        (found by: org.biopax.validator.rules.GenericProteinReferenceOrganismRule)

    • WARNING: no.display.name , category: RECOMMENDATION,  cases: 19,  all fixed!
      No display name is specified. It is useful to have one for the visualization purposes
      • [FIXED!]  object: http://identifiers.org/uniprot/O00746
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/O75414
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P00568
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P15531
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P22392
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P23921
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P27144
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P30520
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P31350
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P54819
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/P56597
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q13232
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q7LG56
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q8N142
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q8TD84
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q96MA6
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q9UIJ7
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q9Y5B8
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://identifiers.org/uniprot/Q9Y6K8
        (found by: org.biopax.validator.rules.DisplayNameRule)

    • WARNING: no.xref.cv.terms , category: RECOMMENDATION,  cases: 1,  all fixed!
      Controlled vocabulary(-ies) without unification xrefs for some of the (valid) terms
      • [FIXED!]  object: PANTHER_GROUPING_90
        terms: {By Homology=[OntologyTermImpl{acc='MI:2163', name='by homology'}]}; MI:2163 added!; info: [Valid 'MI' terms: ALL children of MI:0353]
        (found by: org.biopax.validator.rules.RelationshipTypeCvRule)

    • WARNING: no.xrefs , category: RECOMMENDATION,  cases: 7,  not fixed: 7
      EntityReference does not have any xrefs
      • object: _Adenylate_kinase_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _Adenylosuccinate_synthase_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _ADP_reductase_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _dADP_kinase_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _dGDP_kinase_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _GDP_kinase_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)
      • object: _GDP_reductase_PROTEIN
        (found by: org.biopax.validator.rules.GenericEntityReferenceXrefRule)

    • WARNING: null.entity.reference , category: RECOMMENDATION,  cases: 17,  not fixed: 17
      A Protein, SmallMolecule, etc. (but not a complex) has neither 'entityReference' (highly recommended) nor 'memberPhysicalEntity' values set
      • object: _5_phosphoribosoyl_glycineamide_s7_a7_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _5_phosphoribosyl_4__N_succino_carboxyamide__5_aminoimidazol_s20_a30_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _5_phosphoribosyl_5_amino_4_imidazole_s22_a32_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _5_phosphoribosyl_5_aminoimidazole_s15_a18_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _5_phosphoribosyl_N_formyl_glycineamide_s14_a14_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _5_phosphoribosylamine_s6_a6_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _adenylo_succinate_s31_a46_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _N5_carboxyamino_imidazol_ribonucleotide_s17_a24_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _Ox_FlR_s37_a57_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _phosphoribosyl_carboxy_aminoimidazole_s18_a25_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _phosphoribosyl_formamido_carboxamide_s24_a35_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _Phosphoribosyl_glycinamide__formyltransferase_s48_a89_
        entityReference (range: ProteinReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.ProteinEntityReferenceRule)
      • object: _Phosphoribosylglycinamide__synthase_s49_a90_
        entityReference (range: ProteinReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.ProteinEntityReferenceRule)
      • object: _Phosphoribosylglycinamide_cyclo_ligase_s50_a91_
        entityReference (range: ProteinReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.ProteinEntityReferenceRule)
      • object: _Red_FlR_s38_a58_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _RS_SR_s34_a52_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)
      • object: _RSSR_s44_a78_
        entityReference (range: SmallMoleculeReference) is null, and memberPhysicalEntity is empty
        (found by: org.biopax.validator.rules.SmallMoleculeEntityReferenceRule)

    • WARNING: too.long.display.name , category: RECOMMENDATION,  cases: 64,  not fixed: 64
      'displayName' exceeds the recommended maximum. These names should be kept short so they can easily be displayed, e.g., in a pathway diagram
      • object: _5_phosphoribosoyl_glycineamide_s7_a7_
        5-phosphoribosoyl glycineamide, length=30 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _5_phosphoribosyl_4__N_succino_carboxyamide__5_aminoimidazol_s20_a30_
        5-phosphoribosyl-4-(N-succino-carboxyamide)-5-aminoimidazol, length=59 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _5_Phosphoribosyl_4__N_succinocarboxamide__5_aminoimidazole_lyase_s53_a94_
        5-Phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase, length=64 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _5_phosphoribosyl_5_amino_4_imidazole_s22_a32_
        5-phosphoribosyl-5-amino-4-imidazole, length=36 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _5_phosphoribosyl_5_aminoimidazole_s15_a18_
        5-phosphoribosyl-5-aminoimidazole, length=33 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _5_phosphoribosyl_N_formyl_glycineamide_s14_a14_
        5-phosphoribosyl N-formyl glycineamide, length=38 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _Amidophosphoribosyl_transferase_s46_a87_
        Amidophosphoribosyl transferase, length=31 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _N5_carboxyamino_imidazol_ribonucleotide_s17_a24_
        N5-carboxyamino imidazol ribonucleotide, length=39 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _N5_carboxyaminoimidazole_br_ribonucleotide_mutase_PROTEIN
        N5-carboxyaminoimidazole ribonucleotide mutase, length=46 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _N5_carboxyaminoimidazole_br_ribonucleotide_synthase_PROTEIN
        N5-carboxyaminoimidazole ribonucleotide synthase, length=48 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _N5_carboxyaminoimidazole_ribonucleotide_mutase_s52_a93_
        N5-carboxyaminoimidazole ribonucleotide mutase, length=46 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _N5_carboxyaminoimidazole_ribonucleotide_synthase_s51_a92_
        N5-carboxyaminoimidazole ribonucleotide synthase, length=48 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _phosphoribosyl_carboxy_aminoimidazole_s18_a25_
        phosphoribosyl carboxy aminoimidazole, length=37 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _phosphoribosyl_formamido_carboxamide_s24_a35_
        phosphoribosyl-formamido-carboxamide, length=36 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _Phosphoribosyl_glycinamide__formyltransferase_s48_a89_
        Phosphoribosylglycinamide formyltransferase, length=43 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _Phosphoribosylamine_glycine_ligase_s47_a88_
        Phosphoribosylamine glycine ligase, length=34 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _Phosphoribosylglycinamide__synthase_s49_a90_
        Phosphoribosylformylglycinamide synthase, length=40 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: _Phosphoribosylglycinamide_cyclo_ligase_s50_a91_
        Phosphoribosylformylglycinamide cyclo-ligase, length=44 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/panther.pathway/P02738
        De novo purine biosynthesis, length=27 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/O00746
        Nucleoside diphosphate kinase, mitochondrial(auto-created form other names!), length=44 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/O75414
        Nucleoside diphosphate kinase 6(auto-created form other names!), length=31 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P00568
        Adenylate kinase isoenzyme 1(auto-created form other names!), length=28 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P15531
        Nucleoside diphosphate kinase A(auto-created form other names!), length=31 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P22102
        Phosphoribosylamine glycine ligase, length=34 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P22392
        Nucleoside diphosphate kinase B(auto-created form other names!), length=31 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P23921
        Ribonucleoside-diphosphate reductase large subunit(auto-created form other names!), length=50 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P27144
        Adenylate kinase 4, mitochondrial(auto-created form other names!), length=33 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P30520
        Adenylosuccinate synthetase isozyme 2(auto-created form other names!), length=37 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P31350
        Ribonucleoside-diphosphate reductase subunit M2(auto-created form other names!), length=47 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P54819
        Adenylate kinase 2, mitochondrial(auto-created form other names!), length=33 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/P56597
        Nucleoside diphosphate kinase homolog 5(auto-created form other names!), length=39 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q06203
        Amidophosphoribosyl transferase, length=31 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q13232
        Nucleoside diphosphate kinase 3(auto-created form other names!), length=31 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q7LG56
        Ribonucleoside-diphosphate reductase subunit M2 B(auto-created form other names!), length=49 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q8N142
        Adenylosuccinate synthetase isozyme 1(auto-created form other names!), length=37 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q8TD84
        Down syndrome cell adhesion molecule-like protein 1(auto-created form other names!), length=51 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q9UIJ7
        GTP:AMP phosphotransferase AK3, mitochondrial(auto-created form other names!), length=45 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q9Y5B8
        Nucleoside diphosphate kinase 7(auto-created form other names!), length=31 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/uniprot/Q9Y6K8
        Adenylate kinase isoenzyme 5(auto-created form other names!), length=28 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__5_phosphoribosoyl_glycineamide-_10_Formyl_THF-RIGHT__THF-_5_phosphoribosyl_N_formyl_glycineamide-_r12
        STATE_TRANSITION_LEFT__5_phosphoribosoyl_glycineamide-_10_Formyl_THF-RIGHT__THF-_5_phosphoribosyl_N_formyl_glycineamide-_r12, length=124 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__5_phosphoribosoyl_glycineamide-RIGHT__5_phosphoribosyl_N_formyl_glycineamide-_r11
        STATE_TRANSITION_LEFT__5_phosphoribosoyl_glycineamide-RIGHT__5_phosphoribosyl_N_formyl_glycineamide-_r11, length=104 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__5_phosphoribosoyl_glycineamide-RIGHT__5_phosphoribosyl_N_formyl_glycineamide-_r3
        STATE_TRANSITION_LEFT__5_phosphoribosoyl_glycineamide-RIGHT__5_phosphoribosyl_N_formyl_glycineamide-_r3, length=103 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__5_phosphoribosyl_4__N_succino_carboxyamide__5_aminoimidazol-RIGHT__5_phosphoribosyl_5_amino_4_imidazole-_fumarate-_r8
        STATE_TRANSITION_LEFT__5_phosphoribosyl_4__N_succino_carboxyamide__5_aminoimidazol-RIGHT__5_phosphoribosyl_5_amino_4_imidazole-_fumarate-_r8, length=140 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__5_phosphoribosyl_5_amino_4_imidazole-_10_formyl_THF-RIGHT__THF-_phosphoribosyl_formamido_carboxamide-_r9
        STATE_TRANSITION_LEFT__5_phosphoribosyl_5_amino_4_imidazole-_10_formyl_THF-RIGHT__THF-_phosphoribosyl_formamido_carboxamide-_r9, length=127 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__5_phosphoribosyl_5_aminoimidazole-_CO2-_H2O-_ATP-RIGHT__N5_carboxyamino_imidazol_ribonucleotide-_ADP-_PO4-_r5
        STATE_TRANSITION_LEFT__5_phosphoribosyl_5_aminoimidazole-_CO2-_H2O-_ATP-RIGHT__N5_carboxyamino_imidazol_ribonucleotide-_ADP-_PO4-_r5, length=132 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: STATE_TRANSITION_LEFT__5_phosphoribosyl_N_formyl_glycineamide-_ATP-RIGHT__5_phosphoribosyl_5_aminoimidazole-_ADP-_PO4-_r4
        STATE_TRANSITION_LEFT__5_phosphoribosyl_N_formyl_glycineamide-_ATP-RIGHT__5_phosphoribosyl_5_aminoimidazole-_ADP-_PO4-_r4, length=121 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
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