• Resource: kegg/sce00270.translated; different types of problem: 4
    • number of pathways : 8  number of genes : 0  number of physical entities : 93  number of interactions : 74 
    • auto-fix: true; normalize:
    • errors/warnings: 50 - not fixed: 13;  errors not fixed: 1
    • Modified BioPAX  ("escaped" RDF in HTML; choose BioPAX or XML as return if you plan to process it)
    • ERROR: no.unification.xref , category: RECOMMENDATION,  cases: 1,  not fixed: 1
      EntityReference does not have a UnificationXref. Recommended best practice is to associate each entity reference with a unificiation xref to at least one of the common entity databases such as UniProt
      • object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/EC25116.eref
        (found by: org.biopax.validator.rules.EntityReferenceXrefRule)

    • WARNING: max.cardinality.violated , category: SPECIFICATION,  cases: 5,  not fixed: 5
      Maximal cardinality violation
      • object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00782
        property: controller requires 1 value(s) at most
        (found by: org.biopax.validator.rules.CatalysisControllerCRRule)
      • object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR02026
        property: controller requires 1 value(s) at most
        (found by: org.biopax.validator.rules.CatalysisControllerCRRule)
      • object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR02408
        property: controller requires 1 value(s) at most
        (found by: org.biopax.validator.rules.CatalysisControllerCRRule)
      • object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR02869
        property: controller requires 1 value(s) at most
        (found by: org.biopax.validator.rules.CatalysisControllerCRRule)
      • object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR04859
        property: controller requires 1 value(s) at most
        (found by: org.biopax.validator.rules.CatalysisControllerCRRule)

    • WARNING: no.display.name , category: RECOMMENDATION,  cases: 37,  all fixed!
      No display name is specified. It is useful to have one for the visualization purposes
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00177
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00178
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00192
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00480
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00590
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00650
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00782
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00896
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00897
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR00999
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR01001
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR01286
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR01287
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR01288
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR01290
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR01402
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR01773
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR01775
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR01776
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR01920
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR02026
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR02291
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR02408
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR02433
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR02619
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR02869
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR03105
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR03217
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR03260
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR04405
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR04420
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR04859
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR07363
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR07364
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR07392
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR07395
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • [FIXED!]  object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/rnR07396
        (found by: org.biopax.validator.rules.DisplayNameRule)

    • WARNING: too.long.display.name , category: RECOMMENDATION,  cases: 7,  not fixed: 7
      'displayName' exceeds the recommended maximum. These names should be kept short so they can easily be displayed, e.g., in a pathway diagram
      • object: http://identifiers.org/kegg.pathway/sce00250
        Alanine, aspartate and glutamate metabolism, length=43 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/kegg.pathway/sce00260
        Glycine, serine and threonine metabolism, length=40 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/kegg.pathway/sce00270
        Cysteine and methionine metabolism, length=34 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/kegg.pathway/sce00430
        Taurine and hypotaurine metabolism, length=34 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://identifiers.org/kegg.pathway/sce00770
        Pantothenate and CoA biosynthesis, length=33 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/cpdC04489
        5-Methyltetrahydropteroyltri-L-glutamate, length=40 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)
      • object: http://www.ra.cs.uni-tuebingen.de/software/KEGGtranslator/cpdC04489.eref
        5-Methyltetrahydropteroyltri-L-glutamate, length=40 exceeds 25
        (found by: org.biopax.validator.rules.DisplayNameRule)