#CPATH2: Pathway Commons version 9 28 Jun 2017 #Columns: ID DESCRIPTION TYPE HOMEPAGE PATHWAYS INTERACTIONS PARTICIPANTS http://pathwaycommons.org/pc2/chebi ChEBI Ontology v152, 01-Jun-2017 WAREHOUSE http://www.ebi.ac.uk/chebi/ http://pathwaycommons.org/pc2/uniprot_human UniProtKB/Swiss-Prot (human), 07-Jun-2017 WAREHOUSE http://www.uniprot.org http://pathwaycommons.org/pc2/unichem_mapping Selected whole-source id-mapping files (to ChEBI) from UniChem (fixed with a script), 19-Jun-2017 MAPPING http://www.ebi.ac.uk/unichem/ http://pathwaycommons.org/pc2/reactome Reactome v61 (only 'Homo_sapiens.owl') 23-Jun-2017 BIOPAX http://www.reactome.org 2148 16771 42349 http://pathwaycommons.org/pc2/pid NCI Curated Human Pathways from PID (final); 27-Jul-2015 BIOPAX http://pid.nci.nih.gov/ 745 14707 10526 http://pathwaycommons.org/pc2/psp PhosphoSite Kinase-substrate information; 15-Jun-2017 BIOPAX http://www.phosphosite.org 0 29007 16168 http://pathwaycommons.org/pc2/humancyc HumanCyc 20; 2016; under license from SRI International, www.biocyc.org BIOPAX http://www.humancyc.org 242 6669 5029 http://pathwaycommons.org/pc2/hprd HPRD PSI-MI Release 9; 13-Apr-2010 PSI_MI http://www.hprd.org 0 39826 9542 http://pathwaycommons.org/pc2/panther PANTHER Pathways 3.4.1 on 04-Jul-2016 (auto-converted to human-only model) BIOPAX http://www.pantherdb.org 297 5736 7850 http://pathwaycommons.org/pc2/dip DIP (human), 05-02-2017 PSI_MI http://dip.doe-mbi.ucla.edu 0 9025 4968 http://pathwaycommons.org/pc2/biogrid BioGRID Release 3.4.149 (human and the viruses), 25-May-2017 PSI_MI http://thebiogrid.org/ 0 394749 789498 http://pathwaycommons.org/pc2/intact IntAct (human only; 'negative' files removed), 03-Jun-2017 PSI_MI http://www.ebi.ac.uk/intact/ 0 247237 611820 http://pathwaycommons.org/pc2/intact_complex IntAct Complex (human), 03-Jun-2017 PSI_MI http://www.ebi.ac.uk/intact/ 0 0 2515 http://pathwaycommons.org/pc2/bind BIND (human), 15-Dec-2010 PSI_MI http://bond.unleashedinformatics.com/ 0 35451 72508 http://pathwaycommons.org/pc2/corum CORUM (human only), 17-Feb-2012 PSI_MI http://mips.helmholtz-muenchen.de/genre/proj/corum/ 0 0 4401 http://pathwaycommons.org/pc2/msigdb MSigDB v5.2 (XML), only human C3 TFT motif gene sets, 09/2016; converted to BioPAX with http://github.com/PathwayCommons/msigdb-to-biopax; BIOPAX http://software.broadinstitute.org/gsea/msigdb/ 0 131239 13455 http://pathwaycommons.org/pc2/mirtarbase Human miRNA-target gene relationships from MiRTarBase; v6.1, 15-SEP-2015, converted to BioPAX in Dec-2016 with http://github.com/PathwayCommons/mirtarbase-to-biopax tool BIOPAX http://mirtarbase.mbc.nctu.edu.tw/ 0 337227 17395 http://pathwaycommons.org/pc2/drugbank DrugBank v5.0.6, 01-Apr-2017, converted to BioPAX with our http://github.com/PathwayCommons/drugbank-to-biopax tool BIOPAX http://www.drugbank.ca/ 0 19555 16427 http://pathwaycommons.org/pc2/reconx Recon X: Reconstruction of the Human Genome; SBML model from BioModels, Recon 2 v2.02 (2013), converted to BioPAX by us using http://github.com/PathwayCommons/reconx-to-biopax library. BIOPAX http://humanmetabolism.org/ 0 10816 8324 http://pathwaycommons.org/pc2/ctd Curated chemical–gene interactions from Comparative Toxicogenomics Database, MDI Biological Laboratory, and NC State University; 06-Jun-2017 release; converted to BioPAX with http://github.com/PathwayCommons/ctd-to-biopax tool; BIOPAX http://ctdbase.org/ 0 602966 73712 http://pathwaycommons.org/pc2/kegg KEGG 07/2011 (only human, hsa* files), converted to BioPAX by BioModels (http://www.ebi.ac.uk/biomodels-main/) team BIOPAX http://www.genome.jp/kegg/ 122 3566 3349 http://pathwaycommons.org/pc2/smpdb Small Molecule Pathway Database 2.0, 05-Jun-2016 BIOPAX http://smpdb.ca 1212 4948 4958 http://pathwaycommons.org/pc2/inoh INOH 4.0 (signal transduction and metabolic data), 22-MAR-2011 BIOPAX http://inoh.hgc.jp 774 5433 17134 http://pathwaycommons.org/pc2/netpath NetPath 12/2011 BIOPAX http://www.netpath.org 27 6351 3275 http://pathwaycommons.org/pc2/wp WikiPathways - Community Curated Human Pathways; 29/09/2015 (human) BIOPAX http://www.wikipathways.org 333 9756 9561