#CPATH2: Pathway Commons version 8 20 Apr 2016 #Columns: ID DESCRIPTION TYPE HOMEPAGE PATHWAYS INTERACTIONS PARTICIPANTS http://pathwaycommons.org/pc2/chebi ChEBI Ontology v138, 01-Apr-2016 WAREHOUSE http://www.ebi.ac.uk/chebi/ http://pathwaycommons.org/pc2/uniprot_human UniProtKB/Swiss-Prot (human), 16-Mar-2015 WAREHOUSE http://www.uniprot.org http://pathwaycommons.org/pc2/unichem_mapping Selected whole-source id-mapping files (to ChEBI) from UniChem (manually edited/fixed/sorted), 29-Dec-2015 MAPPING http://www.ebi.ac.uk/unichem/ http://pathwaycommons.org/pc2/reactome Reactome v56 (only 'Homo sapiens.owl') 31-Mar-2016 BIOPAX http://www.reactome.org 2007 14427 35835 http://pathwaycommons.org/pc2/pid NCI Curated Human Pathways from PID (final); 27-Jul-2015 BIOPAX http://pid.nci.nih.gov/ 745 14707 10531 http://pathwaycommons.org/pc2/psp PhosphoSite Kinase-substrate information; 15-Mar-2016 BIOPAX http://www.phosphosite.org 0 27692 15458 http://pathwaycommons.org/pc2/humancyc HumanCyc 19.5; 27-Oct-2015; under license from SRI International, www.biocyc.org BIOPAX http://www.humancyc.org 302 7102 5896 http://pathwaycommons.org/pc2/hprd HPRD PSI-MI Release 9; 13-Apr-2010 PSI_MI http://www.hprd.org 0 40595 9844 http://pathwaycommons.org/pc2/panther PANTHER Pathways 3.4 on 18-May-2015 (auto-converted to human-only model) BIOPAX http://www.pantherdb.org 272 4700 6703 http://pathwaycommons.org/pc2/dip DIP (human), 14-01-2016 PSI_MI http://dip.doe-mbi.ucla.edu 0 8218 4671 http://pathwaycommons.org/pc2/biogrid BioGRID Release 3.4.135 (human and the viruses), 24-Mar-2016 PSI_MI http://thebiogrid.org/ 0 322538 645241 http://pathwaycommons.org/pc2/intact IntAct (human only; 'negative' files removed), 16-Feb-2016 PSI_MI http://www.ebi.ac.uk/intact/ 0 150549 403729 http://pathwaycommons.org/pc2/intact_complex IntAct Complex (human), 16-Feb-2016 PSI_MI http://www.ebi.ac.uk/intact/ 0 0 1452 http://pathwaycommons.org/pc2/bind BIND (human), 15-Dec-2010 PSI_MI http://bond.unleashedinformatics.com/ 0 35279 74675 http://pathwaycommons.org/pc2/corum CORUM (human), 17-Feb-2012 PSI_MI http://mips.helmholtz-muenchen.de/genre/proj/corum/ 0 0 4401 http://pathwaycommons.org/pc2/transfac Transctiption Factor Target data from Collection 3 in MSigDB (originally from: TRANSFAC Public, by BIOBASE, QIAGEN); version 7.4 BIOPAX http://www.gene-regulation.com/ 427 261624 13276 http://pathwaycommons.org/pc2/mirtarbase Human miRNA-target gene relationships from MiRTarBase; v4.5, 01-NOV-2013 (converted 13-MAR-2015) BIOPAX http://mirtarbase.mbc.nctu.edu.tw/ 5 51214 12775 http://pathwaycommons.org/pc2/drugbank DrugBank v4.3 converted to BioPAX from the original XML dump BIOPAX http://www.drugbank.ca/ 0 19297 15854 http://pathwaycommons.org/pc2/reconx Recon X: Reconstruction of the Human Genome, converted from SBML; 2.03 BIOPAX http://humanmetabolism.org/ 1 10813 8316 http://pathwaycommons.org/pc2/ctd Comparative Toxicogenomics Database (human), 20150603 BIOPAX http://ctdbase.org/ 32722 390428 61031 http://pathwaycommons.org/pc2/kegg KEGG 07/2011 (only human, hsa* files), converted to BioPAX by BioModels (http://www.ebi.ac.uk/biomodels-main/) team BIOPAX http://www.genome.jp/kegg/ 122 3566 3355 http://pathwaycommons.org/pc2/smpdb Small Molecule Pathway Database 2.0, 07-Jul-2015 BIOPAX http://smpdb.ca 1206 4701 4863 http://pathwaycommons.org/pc2/inoh INOH 4.0 (signal transduction and metabolic data), 22-MAR-2011 BIOPAX http://inoh.hgc.jp 774 5432 17142 http://pathwaycommons.org/pc2/netpath NetPath 12/2011 BIOPAX http://www.netpath.org 27 6347 3266 http://pathwaycommons.org/pc2/wp WikiPathways - Community Curated Human Pathways; 29/09/2015 (human) BIOPAX http://www.wikipathways.org 333 9758 9584