#CPATH2: "Pathway Commons" version 12 13 Sep 2019 #Columns: ID DESCRIPTION TYPE HOMEPAGE PATHWAYS INTERACTIONS PARTICIPANTS http://pathwaycommons.org/pc12/chebi ChEBI Ontology v179, 29-aug-2019 WAREHOUSE https://www.ebi.ac.uk/chebi/ http://pathwaycommons.org/pc12/uniprot_human UniProtKB/Swiss-Prot (human), 12-Sep-2019 WAREHOUSE https://www.uniprot.org http://pathwaycommons.org/pc12/unichem_mapping Selected whole-source id-mapping files (to ChEBI) from UniChem (fixed with a script), 01-sep-2019 MAPPING https://www.ebi.ac.uk/unichem/ http://pathwaycommons.org/pc12/reactome Reactome v69 (only 'Homo_sapiens.owl') 28-May-2019 BIOPAX https://www.reactome.org 2272 19640 46217 http://pathwaycommons.org/pc12/pid NCI Curated Human Pathways from PID (final); 27-Jul-2015 BIOPAX https://en.wikipedia.org/wiki/NCI-Nature_Pathway_Interaction_Database 745 16017 10931 http://pathwaycommons.org/pc12/psp PhosphoSite Kinase-substrate information; 19-Aug-2019 BIOPAX https://www.phosphosite.org 0 30040 16835 http://pathwaycommons.org/pc12/humancyc HumanCyc 21; 2017; under license from SRI International, www.biocyc.org BIOPAX https://humancyc.org 242 6706 5078 http://pathwaycommons.org/pc12/hprd HPRD PSI-MI Release 9; 13-Apr-2010 PSI_MI http://www.hprd.org 0 39824 83475 http://pathwaycommons.org/pc12/panther PANTHER Pathways 3.6.3 on 25-Mar-2019 (auto-converted to human-only model) BIOPAX http://www.pantherdb.org 295 5982 8810 http://pathwaycommons.org/pc12/dip DIP (human - converted Hsapi20170205.mif25.gz to BioPAX), 05-02-2017 PSI_MI https://dip.doe-mbi.ucla.edu 0 9025 20477 http://pathwaycommons.org/pc12/biogrid BioGRID Release 3.5.175 (only BIOGRID-ORGANISM-Homo_sapiens-3.5.175.psi25.xml), 25-Jul-2019 PSI_MI https://thebiogrid.org/ 0 501500 1003000 http://pathwaycommons.org/pc12/intact IntAct (human), except 'negative', 28-Aug-2019 PSI_MI https://www.ebi.ac.uk/intact/ 0 308150 828348 http://pathwaycommons.org/pc12/intact_complex IntAct Complex (human), 28-Aug-2019 PSI_MI https://www.ebi.ac.uk/intact/ 0 0 3463 http://pathwaycommons.org/pc12/bind BIND (human), 15-Dec-2010 PSI_MI https://en.wikipedia.org/wiki/Biomolecular_Object_Network_Databank#Biomolecular_Interaction_Network_Database_(BIND) 0 35451 87244 http://pathwaycommons.org/pc12/corum CORUM 3.0 (human complexes), 03-Sep-2018 PSI_MI https://mips.helmholtz-muenchen.de/genre/proj/corum/ 0 0 10406 http://pathwaycommons.org/pc12/msigdb MSigDB v5.2 (XML), human C3 TFT motif gene sets, 09-2016; converted with http://github.com/PathwayCommons/msigdb-to-biopax BIOPAX http://software.broadinstitute.org/gsea/msigdb/ 0 252050 12307 http://pathwaycommons.org/pc12/mirtarbase Human miRNA-target gene relationships from MiRTarBase; v7.0, 15-SEP-2017, converted in Apr-2018 with http://github.com/PathwayCommons/mirtarbase-to-biopax BIOPAX http://mirtarbase.mbc.nctu.edu.tw/ 0 395703 17663 http://pathwaycommons.org/pc12/drugbank DrugBank v5.1.4, 02-Jul-2019, converted to BioPAX with our http://github.com/PathwayCommons/drugbank-to-biopax BIOPAX http://www.drugbank.ca/ 0 23784 22871 http://pathwaycommons.org/pc12/reconx Recon X: Reconstruction of the Human Genome; SBML model from BioModels, Recon 2 v2.02 (2013), converted to BioPAX by us using http://github.com/PathwayCommons/reconx-to-biopax library. SBML http://humanmetabolism.org/ 0 10910 8908 http://pathwaycommons.org/pc12/ctd Curated chemical-gene interactions from Comparative Toxicogenomics Database, MDI Biological Laboratory, and NC State University; 26-Jun-2019; converted with http://github.com/PathwayCommons/ctd-to-biopax BIOPAX http://ctdbase.org/ 0 721402 78832 http://pathwaycommons.org/pc12/kegg KEGG 07/2011 (only human, hsa* files), converted to BioPAX by BioModels (http://www.ebi.ac.uk/biomodels-main/) team BIOPAX https://www.genome.jp/kegg/ 122 3568 3536 http://pathwaycommons.org/pc12/inoh INOH 4.0 (signal transduction and metabolic data), 22-MAR-2011 BIOPAX http://inoh.hgc.jp 774 5625 22799 http://pathwaycommons.org/pc12/netpath NetPath 12/2011 BIOPAX http://www.netpath.org 27 7214 5337 http://pathwaycommons.org/pc12/pathbank Pathbank BioPAX data (primary, human pathway data only) BIOPAX http://pathbank.org 1295 5291 6614 http://pathwaycommons.org/pc12/innatedb InnateDB Curated Interactions (human), downloaded 2019-09-01 PSI_MITAB https://www.innatedb.ca 0 26173 59245