GO_Human ftp://ftp.ebi.ac.uk/pub/databases/GO/goa/HUMAN//goa_human.gaf.gz Last-Modified: Tue, 06 Nov 2018 09:15:24 GMT ======== GO_OBO_FILE ftp://ftp.geneontology.org/pub/go/ontology/obo_format_1_2//gene_ontology.1_2.obo Last-Modified: Thu, 20 Sep 2018 09:33:23 GMT ======== Human_phenotype_OBO_FILE http://compbio.charite.de/jenkins/job/hpo/lastStableBuild/artifact/hp/human-phenotype-ontology.obo ======== Human_Phenotype http://compbio.charite.de/jenkins/job/hpo.annotations.monthly/lastStableBuild/artifact/annotation/ALL_SOURCES_ALL_FREQUENCIES_genes_to_phenotype.txt Last-Modified: Tue, 09 Oct 2018 08:03:26 GMT ======== IOB IOB pathways were recieved from IOB in July 2011, validated and autofixed using the biopax validator. ===================== KEGG Kegg was downloaded from the previously public ftp site on July 1, 2011 ============MSigdb version 5.1 Msigdb -c3 - mirs ============= MSigdb c2 version 5.1 - canonicale pathway set (cp) excluding Reactome and Kegg. Contains only biocarta and misc sources to create file downloade misgdb cp and performed following command: grep -v KEGG c2.cp.v5.1.entrez.gmt | grep -v REACTOME grep -v KEGG > c2.cpfiltered.v5.1.entrez.gmt ============== MSigdb hallmark version 5.1 - Hallmark gene sets summarize and represent specific well-defined biological states or processes and display coherent expression. These gene sets were generated by a computational methodology based on identifying gene set overlaps and retaining genes that display coordinate expression. =============== MSigdb version 5.1 msigdb c3 - transcription factors =============== NetPath http://www.netpath.org/data/biopax//NetPath_1.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_2.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_3.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_4.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_5.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_6.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_7.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_8.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_9.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_10.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_11.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_12.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_13.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_14.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_15.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_16.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_17.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_18.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_19.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_20.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_21.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_22.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_23.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_24.owl ======== NetPath http://www.netpath.org/data/biopax//NetPath_25.owl ======== Panther ftp://ftp.pantherdb.org//pathway/current_release//BioPAX.tar.gz Last-Modified: Fri, 26 Jan 2018 00:35:08 GMT ======== Reactome https://www.reactome.org/download/current//biopax.zip Last-Modified: Wed, 26 Sep 2018 13:19:32 GMT ======== WikiPathways http://data.wikipathways.org/current/gmt//wikipathways-20181110-gmt-Homo_sapiens.gmt Last-Modified: Sat, 10 Nov 2018 13:05:25 GMT ========